Surpin M, Raikhel N. Traffic jams affect plant development and signal transduction. Nat Rev Mol Cell Biol. 2004;5:100–9.
Article
CAS
PubMed
Google Scholar
Emery G, Knoblich JA. Endosome dynamics during development. Curr Opin Cell Biol. 2006;18(4):407–15.
Article
CAS
PubMed
Google Scholar
Schreiber SL. Chemical genetics resulting from a passion for synthetic organic chemistry. Bioorg Med Chem. 1998;6:1127–52.
Article
CAS
PubMed
Google Scholar
Lokey RS. Forward chemical genetics: progress and obstacles on the path to a new pharmacopoeia. Curr Opin Chem Biol. 2003;7:91–6.
Article
CAS
PubMed
Google Scholar
Rix U, Superti-Furga G. Target profiling of small molecules by chemical proteomics. Nat Chem Biol. 2009;5:616–24.
Article
CAS
PubMed
Google Scholar
Roemer T, Davies J, Giaever G, Nislow C. Bugs, drugs and chemical genomics. Nat Chem Biol. 2012;8:46–56.
Article
CAS
Google Scholar
Chan TF, Carvalho J, Riles L, Zheng XF. A chemical genomics approach toward understanding the global functions of the target of rapamycin protein (TOR). Proc Natl Acad Sci USA. 2000;97:13227–32.
Article
CAS
PubMed Central
PubMed
Google Scholar
Giaever G, Flaherty P, Kumm J, Proctor M, Nislow C, Jaramillo DF, et al. Chemogenomic profiling: identifying the functional interactions of small molecules in yeast. Proc Natl Acad Sci USA. 2004;101:793–8.
Article
CAS
PubMed Central
PubMed
Google Scholar
Butcher RA, Schreiber SL. Identification of Ald6p as the target of a class of small-molecule suppressors of FK506 and their use in network dissection. Proc Natl Acad Sci USA. 2004;101:7868–73.
Article
CAS
PubMed Central
PubMed
Google Scholar
Zouhar J, Hicks GR, Raikhel NV. Sorting inhibitors (Sortins): chemical compounds to study vacuolar sorting in Arabidopsis. Proc Natl Acad Sci USA. 2004;101:9497–501.
Article
CAS
PubMed Central
PubMed
Google Scholar
Rothman JH, Howald I, Stevens TH. Characterization of genes required for protein sorting and vacuolar function in the yeast Saccharomyces cerevisiae. EMBO J. 1989;8:2057–65.
CAS
PubMed Central
PubMed
Google Scholar
Roberts CJ, Nothwehr SF, Stevens TH. Membrane protein sorting in the yeast secretory pathway: evidence that the vacuole may be the default compartment. J Cell Biol. 1992;119:69–83.
Article
CAS
PubMed
Google Scholar
Bowers K, Stevens TH. Protein transport from the late Golgi to the vacuole in the yeast Saccharomyces cerevisiae. Biochim Biophys Acta. 2005;1744:438–54.
Article
CAS
PubMed
Google Scholar
Norambuena L, Zouhar J, Hicks GR, Raikhel NV. Identification of cellular pathways affected by Sortin2, a synthetic compound that affects protein targeting to the vacuole in Saccharomyces cerevisiae. BMC Chem Biol. 2008;8:1.
Article
PubMed Central
PubMed
Google Scholar
Raymond CK, Howald-Stevenson I, Vater CA, Stevens TH. Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389–402.
Article
CAS
PubMed Central
PubMed
Google Scholar
Bonangelino CJ, Nau JJ, Duex JE, Brinkman M, Wurmser AE, Gary JD, et al. Osmotic stress-induced increase of phosphatidylinositol 3,5-bisphosphate requires Vac14p, an activator of the lipid kinase Fab1p. J Cell Biol. 2002;156:1015–28.
Article
CAS
PubMed Central
PubMed
Google Scholar
Warren DT, Andrews PD, Gourlay CW, Ayscough KR. Sla1p couples the yeast endocytic machinery to proteins regulating actin dynamics. J Cell Sci. 2002;115:1703–15.
CAS
PubMed
Google Scholar
Stamenova SD, French ME, He Y, Francis SA, Kramer ZB, Hicke L. Ubiquitin binds to and regulates a subset of SH3 domains. Mol Cell. 2007;25:273–84
Article
CAS
PubMed Central
PubMed
Google Scholar
UniProt-GOA. Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries. Saccharomyces Genome Database. 2011.
DDB, FB, MGI, GOA, ZFIN curators. Gene Ontology annotation through association of InterPro records with GO terms. Personal Communication to Saccharomyces Genome Database. 2001.
Pruyne D, Bretscher A. Polarization of cell growth in yeast. J Cell Sci. 2000;113(Pt 4):571–85.
CAS
PubMed
Google Scholar
Howard JP, Hutton JL, Olson JM, Payne GS. Sla1p serves as the targeting signal recognition factor for NPFX(1,2)D-mediated endocytosis. J Cell Biol. 2002;157:315–26.
Article
CAS
PubMed Central
PubMed
Google Scholar
Ayscough KR, Eby JJ, Lila T, Dewar H, Kozminski KG, Drubin DG. Sla1p is a functionally modular component of the yeast cortical actin cytoskeleton required for correct localization of both Rho1p-GTPase and Sla2p, a protein with talin homology. Mol Biol Cell. 1999;10:1061–75.
Article
CAS
PubMed Central
PubMed
Google Scholar
Gardiner FC, Costa R, Ayscough KR. Nucleocytoplasmic trafficking is required for functioning of the adaptor protein Sla1p in endocytosis. Traffic. 2007;8:347–58.
Article
CAS
PubMed Central
PubMed
Google Scholar
Narayanaswamy R, Moradi EK, Niu W, Hart GT, Davis M, McGary KL, et al. Systematic definition of protein constituents along the major polarization axis reveals an adaptive reuse of the polarization machinery in pheromone-treated budding yeast. J Proteome Res. 2009;8:6–19.
Article
CAS
PubMed Central
PubMed
Google Scholar
Pishvaee B, Munn A, Payne GS. A novel structural model for regulation of clathrin function. EMBO J. 1997;16:2227–39.
Article
CAS
PubMed Central
PubMed
Google Scholar
Newpher TM, Lemmon SK. Clathrin is important for normal actin dynamics and progression of Sla2p-containing patches during endocytosis in yeast. Traffic. 2006;7:574–88.
Article
CAS
PubMed Central
PubMed
Google Scholar
Masselot M, De Robichon-Szulmajster H. Methionine biosynthesis in Saccharomyces cerevisiae. I. Genetical analysis of auxotrophic mutants. Mol Gen Genet. 1975;139:121–32.
Article
CAS
PubMed
Google Scholar
Kou H, Zhou Y, Gorospe RM, Wang Z. Mms19 protein functions in nucleotide excision repair by sustaining an adequate cellular concentration of the TFIIH component Rad3. Proc Natl Acad Sci USA. 2008;105:15714–9.
Article
CAS
PubMed Central
PubMed
Google Scholar
Lauder S, Bankmann M, Guzder SN, Sung P, Prakash L, Prakash S. Dual requirement for the yeast MMS19 gene in DNA repair and RNA polymerase II transcription. Mol Cell Biol. 1996;16:6783–93.
CAS
PubMed Central
PubMed
Google Scholar
Huh WK, Falvo JV, Gerke LC, Carroll AS, Howson RW, Weissman JS, et al. Global analysis of protein localization in budding yeast. Nature. 2003;425:686–91.
Article
CAS
PubMed
Google Scholar
Cantagrel V, Lefeber DJ, Ng BG, Guan Z, Silhavy JL, Bielas SL, et al. SRD5A3 is required for converting polyprenol to dolichol and is mutated in a congenital glycosylation disorder. Cell. 2010;142:203–17.
Article
CAS
PubMed Central
PubMed
Google Scholar
Mosch HU, Fink GR. Dissection of filamentous growth by transposon mutagenesis in Saccharomyces cerevisiae. Genetics. 1997;145:671–84.
CAS
PubMed Central
PubMed
Google Scholar
De Hertogh B, Carvajal E, Talla E, Dujon B, Baret P, Goffeau A. Phylogenetic classification of transporters and other membrane proteins from Saccharomyces cerevisiae. Funct Integr Genomics. 2002;2:154–70.
Article
PubMed
Google Scholar
Saba JD, Nara F, Bielawska A, Garrett S, Hannun YA. The BST1 gene of Saccharomyces cerevisiae is the sphingosine-1-phosphate lyase. J Biol Chem. 1997;272:26087–90.
Article
CAS
PubMed
Google Scholar
Birchwood CJ, Saba JD, Dickson RC, Cunningham KW. Calcium influx and signaling in yeast stimulated by intracellular sphingosine 1-phosphate accumulation. J Biol Chem. 2001;276:11712–8.
Article
CAS
PubMed
Google Scholar
Gottlieb D, Heideman W, Saba JD. The DPL1 gene is involved in mediating the response to nutrient deprivation in Saccharomyces cerevisiae. Mol Cell Biol Res Commun. 1999;1:66–71.
Article
CAS
PubMed
Google Scholar
Mukhopadhyay D, Howell KS, Riezman H, Capitani G. Identifying key residues of sphinganine-1-phosphate lyase for function in vivo and in vitro. J Biol Chem. 2008;283:20159–69.
Article
CAS
PubMed
Google Scholar
Burston HE, Maldonado-Baez L, Davey M, Montpetit B, Schluter C, Wendland B, et al. Regulators of yeast endocytosis identified by systematic quantitative analysis. J Cell Biol. 2009;185:1097–110.
Article
CAS
PubMed Central
PubMed
Google Scholar
Vida TA, Emr SD. A new vital stain for visualizing vacuolar membrane dynamics and endocytosis in yeast. J Cell Biol. 1995;128:779–92.
Article
CAS
PubMed
Google Scholar
Breitkreutz BJ, Stark C, Tyers M. Osprey: a network visualization system. Genome Biol. 2003;4:R22.
Article
PubMed Central
PubMed
Google Scholar
Brodsky FM, Chen CY, Knuehl C, Towler MC, Wakeham DE. Biological basket weaving: formation and function of clathrin-coated vesicles. Annu Rev Cell Dev Biol. 2001;17:517–68.
Article
CAS
PubMed
Google Scholar
Carroll SY, Stimpson HE, Weinberg J, Toret CP, Sun Y, Drubin DG. Analysis of yeast endocytic site formation and maturation through a regulatory transition point. Mol Biol Cell. 2012;23(4):657–68.
Article
CAS
PubMed Central
PubMed
Google Scholar
Gabriely G, Kama R, Gerst JE. Involvement of specific COPI subunits in protein sorting from the late endosome to the vacuole in yeast. Mol Cell Biol. 2007;27(2):526–40.
Article
CAS
PubMed Central
PubMed
Google Scholar
Jarmoszewicz K, Łukasiak K, Riezman H, Kaminska J. Rsp5 ubiquitin ligase is required for protein trafficking in Saccharomyces cerevisiae COPI mutants. PLoS One. 2012;7(6):e39582.
Article
CAS
PubMed Central
PubMed
Google Scholar
Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature. 2007;446(7137):806–10.
Article
CAS
PubMed
Google Scholar
Cowart LA, Shotwell M, Worley ML, Richards AJ, Montefusco DJ, Hannun Y, et al. Revealing a signaling role of phytosphingosine-1-phosphate in yeast. Mol Syst Biol. 2010;6:349.
Article
PubMed Central
PubMed
Google Scholar
Pilecka I, Banach-Orlowska M, Miaczynska M. Nuclear functions of endocytic proteins. Eur J Cell Biol. 2007;86:533–47.
Article
CAS
PubMed
Google Scholar
Scita G, Di Fiore PP. The endocytic matrix. Nature. 2010;463:464–73.
Article
CAS
PubMed
Google Scholar