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Table 4 The allele-specific copy number (ASCN) of the 11 genes with high loss of heterozygosity (LOH) frequency

From: Analysis of gene expression changes associated with human carcinoma-associated fibroblasts in non-small cell lung carcinoma

Gene symbol The copy number of A allele The copy number of B allele Proportion (%) Description Log2 FC
LXN 2 0 100 Loss of the one allele,gain of another allele −1.9225
RASL11A 2 0 100 Loss of the one allele,gain of another allele −0.885
KCNRG 0 2 100 Loss of the one allele,gain of another allele −0.6275
TFAP2C 0.3 1.7 70 Copy neutral LOH in 70% 0.9875
SPHK1 0.3 1.7 70 Copy neutral LOH in 70% 0.6825
TP53INP1 1.6 0.4 60 Copy neutral LOH in 60% −0.795
HOXD12 1.5 0.5 50 Copy neutral LOH in 50% 0.87
ERRFI1 1.5 0.5 50 Copy neutral LOH in 50% −1.195
RPS6KA6 0.6 1.6 50 Loss of one allele in 50% −1.12
DNAJB4 0.4 1.4 50 Copy neutral LOH in 50% −1.02
ITGA7 0.5 1.5 50 Copy neutral LOH in 50% −0.925
  1. Gene symbol the name of one gene, proportion the percentage of copy number of A allele minus copy number of B allele, Description the frequency of LOH, FC fold change
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