Skip to main content

Table 4 Graph features from targeted, untargeted and chimeric-part-removed reads

From: Improved assembly procedure of viral RNA genomes amplified with Phi29 polymerase from new generation sequencing data

  Parameters
Number of vertices Number of edges
MIDV ARB5290
 Targeted sequences 220,838 438,926
 Untargeted sequences 719,848 1,442,274
 Chimeric reads removal N.A N.A
Mengo 19017
 Targeted sequences 790,086 1,572,606
 Untargeted sequences 1,411,912 2,803,374
 Chimeric reads removal 573,848 1,143,146
Mengo 3741
 Targeted sequences 135,440 264,970
 Untargeted sequences 534,694 1,052,622
 Chimeric reads removal 58,452 115,682