Integrated analyses of copy number variations and gene differential expression in lung squamous-cell carcinoma

Biological Research

Table 3 Distribution of copy number duplications in chromosomes

Chr	Duplications only
	Observed CNV in cases and controls	RATIO of Case/Control	p values	Observed CNV in cases and controls	Ratio of Case/Control	p values	Observed CNV in cases and controls	Ratio of Case/Control	p values
	1 ~ 10 kb			10 ~ 50 kb			>50 kb
1	1924	4.56541	1.00E−04	2621	4.97426	1.00E−04	11,911	1.98385	0.0022
2	1912	3.84581	0.0086	2627	3.91763	1.00E−04	13,136	1.71774	1.00E−04
3	2070	3.17944	0.0012	2669	3.17624	1.00E−04	13,120	1.56874	1.00E−04
4	1724	4.56274	0.8782	2410	4.06176	0.2453	11,164	1.80262	0.999
5	1272	3.06097	1	1866	4.18235	0.9991	9063	1.87245	0.9003
6	1560	3.12497	0.0007	2049	3.86111	1.00E−04	9809	1.71417	0.0002
7	1782	3.99707	0.9365	2523	4.25108	0.1637	9972	1.86011	0.9153
8	1667	4.06267	1.00E−04	2150	3.30777	1.00E−04	10,659	1.61986	1.00E−04
9	1178	4.59415	0.0016	1552	4.38777	0.1466	7928	1.83387	0.0005
10	986	5.63493	0.0195	1243	4.28617	0.0254	7138	1.89335	1.00E−04
11	1167	3.06759	1.00E−04	1598	3.44469	1.00E−04	8478	1.52969	1.00E−04
12	1254	3.18495	0.3166	1432	3.62956	0.0677	7431	1.70661	0.0044
13	700	3.91295	0.1717	1011	3.52657	0.0039	5535	1.60301	0.0112
14	655	3.43045	0.342	1070	4.14655	0.5122	5294	1.66644	0.0106
15	574	4.72049	0.3773	930	4.28337	1.00E−04	4371	2.0948	1.00E−04
16	726	5.96031	0.0747	1094	6.71092	0.1114	5387	2.4445	1.00E−04
17	597	5.26255	0.0105	995	4.69484	1.00E−04	5477	1.89667	0.0003
18	719	3.61849	1	849	4.09121	1	4894	1.54215	1
19	520	4.72055	0.8769	943	4.15877	0.9467	5166	1.67776	1
20	594	4.01529	0.0188	728	4.42725	0.0907	3890	1.58039	0.0172
21	340	5.28483	0.9071	558	3.61798	0.8819	2724	1.8263	0.2397
22	526	6.95908	0.0003	689	9.38731	0.0032	2976	2.84862	1.00E−04

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