Primer | Sequence 5' to 3' | Targeted site | Product size (bp) | Reference |
---|
Esakf/ | GCTYTGCTGACGAGTGGCGGa | 16S rDNA | 929 | [33] |
Esakr | ATCTCTGCAGGATTCTCTGG |
EsgluAf/ | TGAAAGCAATCGACAAGAAGb |
gluA
| 1680 | [34] |
EsgluAr | ACTCATTACCCCTCCTGATG |
Saka 1a/ | ACAGGGAGCAGCTTGCTGCc | V1g | 952 | [14] |
Saka 2b | TCCCGCATCTCTGCAGGA | V3h |
ESSF/ | GGATTTAACCGTGAACTTTTCCd |
ompA
| 469 | [35] |
ESSR | CGCCAGCGATGTTAGAAGA |
Zpx F/ | GAAAGCGTATAAGCGCGATTCe |
zpx
| 94 | [27] |
Zpx R | GTTCCAGAAGGCGTTCTGGT |
- a&cRunning conditions; 94°C for 5 min; 35 cycles of 94°C for 1 min each; 60°C for 1 min; 72°C for 1.5 min; a final extension period of 5 min at 72°C.
- bRunning conditions; 94°C for 10 min; 35 cycles of 94°C for 30 sec each; 60°C for 1 min; 72°C for1.5 min; final extension period of 5 min at 72°C.
- dRunning conditions; 94°C for 5 min; 35 cycles of 94°C for 1 min each; 54°C for 45 sec; 72°C for1.5 min; final extension period of 5 min at 72°C.
- eRunning conditions; 94°C for 15 min; 35 cycles of 94°C for 1 min each; 58°C for 1 min; 72°C for1.5 min; final extension period of 10 min at 72°C.