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Table 2 The patterns of SNP marker in the L. chinense chloroplast genome

From: Development of nuclear SSR and chloroplast genome markers in diverse Liriodendron chinense germplasm based on low-coverage whole genome sequencing

Position Loction Region Type GZST JXLS GZLP HNSN
matK Exon LSC T/C T T C C
matK Exon LSC T/C T T C C
matK-trnK Spacer LSC A/G A A G A
trnK-rps16 Spacer LSC T/G T T G T
trnK-rps16 Spacer LSC T/C C C C T
trnK-rps16 Spacer LSC A/C A A C C
rps16-trnQ Spacer LSC T/G T T G G
trnQ-psbK Spacer LSC T/G G G T G
psbK-psbI Spacer LSC T/C T T C T
trnG Intron LSC A/G G G G A
trnR-atpA Spacer LSC T/C T T T C
atpF Intron LSC A/G G G G A
atpF-atpH Spacer LSC T/C C C C T
atpH-atpI Spacer LSC A/C C C A A
atpH-atpI Spacer LSC C/G G G G C
rps2-rpoC2 Spacer LSC A/T A A A T
rpoC2 Exon LSC T/G T T G T
rpoC1 Exon LSC A/G A A G G
rpoB-trnC Spacer LSC T/G G G T G
trnT-psbD Spacer LSC T/G G G G T
ndhC-trnV Spacer LSC A/C C C C A
trnV Intron LSC A/T T T A A
atpB Exon LSC T/C T T C C
accD-psaI Spacer LSC T/G G G T G
psaI-ycf4 Spacer LSC A/G G G A A
ycf4-cemA Spacer LSC T/G G G T G
psbE-petL Spacer LSC A/G A A A G
psbE-petL Spacer LSC A/G G G G A
psbE-petL Spacer LSC A/C C C C A
rpl20-rps12 Spacer LSC A/C A A C A
psbB Exon LSC A/C A A C C
rps11-rpl36 Spacer LSC A/C A A C C
rpl14 Exon LSC A/T A A T T
ndhF Exon SSC A/C A A C C
ndhF Exon SSC T/C C C T C
ndhF-rpl32 Spacer SSC A/C C C C A
ndhF-rpl32 Spacer SSC A/C A A C C
rpl32 Exon SSC T/G G G G T
psaC-ndhE Spacer SSC A/C A A C A
ndhA Exon SSC A/G G G A G
ndhH Exon SSC T/G T T G G
ycf1 Exon SSC T/C T T C C
ycf1 Exon SSC T/C C C T C
ycf1 Exon SSC A/G A A G G
ycf1 Exon SSC A/G A A A G