Table 2 The patterns of SNP marker in the L. chinense chloroplast genome
Position | Loction | Region | Type | GZST | JXLS | GZLP | HNSN |
|---|---|---|---|---|---|---|---|
matK | Exon | LSC | T/C | T | T | C | C |
matK | Exon | LSC | T/C | T | T | C | C |
matK-trnK | Spacer | LSC | A/G | A | A | G | A |
trnK-rps16 | Spacer | LSC | T/G | T | T | G | T |
trnK-rps16 | Spacer | LSC | T/C | C | C | C | T |
trnK-rps16 | Spacer | LSC | A/C | A | A | C | C |
rps16-trnQ | Spacer | LSC | T/G | T | T | G | G |
trnQ-psbK | Spacer | LSC | T/G | G | G | T | G |
psbK-psbI | Spacer | LSC | T/C | T | T | C | T |
trnG | Intron | LSC | A/G | G | G | G | A |
trnR-atpA | Spacer | LSC | T/C | T | T | T | C |
atpF | Intron | LSC | A/G | G | G | G | A |
atpF-atpH | Spacer | LSC | T/C | C | C | C | T |
atpH-atpI | Spacer | LSC | A/C | C | C | A | A |
atpH-atpI | Spacer | LSC | C/G | G | G | G | C |
rps2-rpoC2 | Spacer | LSC | A/T | A | A | A | T |
rpoC2 | Exon | LSC | T/G | T | T | G | T |
rpoC1 | Exon | LSC | A/G | A | A | G | G |
rpoB-trnC | Spacer | LSC | T/G | G | G | T | G |
trnT-psbD | Spacer | LSC | T/G | G | G | G | T |
ndhC-trnV | Spacer | LSC | A/C | C | C | C | A |
trnV | Intron | LSC | A/T | T | T | A | A |
atpB | Exon | LSC | T/C | T | T | C | C |
accD-psaI | Spacer | LSC | T/G | G | G | T | G |
psaI-ycf4 | Spacer | LSC | A/G | G | G | A | A |
ycf4-cemA | Spacer | LSC | T/G | G | G | T | G |
psbE-petL | Spacer | LSC | A/G | A | A | A | G |
psbE-petL | Spacer | LSC | A/G | G | G | G | A |
psbE-petL | Spacer | LSC | A/C | C | C | C | A |
rpl20-rps12 | Spacer | LSC | A/C | A | A | C | A |
psbB | Exon | LSC | A/C | A | A | C | C |
rps11-rpl36 | Spacer | LSC | A/C | A | A | C | C |
rpl14 | Exon | LSC | A/T | A | A | T | T |
ndhF | Exon | SSC | A/C | A | A | C | C |
ndhF | Exon | SSC | T/C | C | C | T | C |
ndhF-rpl32 | Spacer | SSC | A/C | C | C | C | A |
ndhF-rpl32 | Spacer | SSC | A/C | A | A | C | C |
rpl32 | Exon | SSC | T/G | G | G | G | T |
psaC-ndhE | Spacer | SSC | A/C | A | A | C | A |
ndhA | Exon | SSC | A/G | G | G | A | G |
ndhH | Exon | SSC | T/G | T | T | G | G |
ycf1 | Exon | SSC | T/C | T | T | C | C |
ycf1 | Exon | SSC | T/C | C | C | T | C |
ycf1 | Exon | SSC | A/G | A | A | G | G |
ycf1 | Exon | SSC | A/G | A | A | A | G |