Table 1 The results of quality control for sequencing data
Sample | Raw reads | Raw base | Clean read | Clean base | Clean reads rate (%) | Clean reads mean length |
|---|---|---|---|---|---|---|
C1_R1 | 23,719,333 | 3,557,899,950 | 22,042,930 | 2,960,605,850 | 92.93 | 134.3109038 |
C1_R2 | 23,719,333 | 3,557,899,950 | 19,989,260 | 2,662,625,066 | 84.27 | 133.2027832 |
C2_R1 | 34,224,122 | 5,133,618,300 | 32,282,452 | 4,221,477,560 | 94.33 | 130.766943 |
C2_R2 | 34,224,122 | 5,133,618,300 | 30,870,743 | 4,017,646,477 | 90.20 | 130.1441458 |
C3_R3 | 28,305,868 | 4,245,880,200 | 26,491,724 | 3,503,162,645 | 93.59 | 132.2361144 |
C3_R3 | 28,305,868 | 4,245,880,200 | 25,565,624 | 3,364,967,177 | 90.32 | 131.6207724 |
H1_R1 | 31,013,406 | 4,652,010,900 | 29,028,783 | 3,809,754,255 | 93.60 | 131.2405778 |
H1_R2 | 31,013,406 | 4,652,010,900 | 28,211,189 | 3,695,864,424 | 90.96 | 131.0070421 |
H2_R1 | 36,876,370 | 5,531,455,500 | 34,583,327 | 4,464,527,411 | 93.78 | 129.0947922 |
H2_R2 | 36,876,370 | 5,531,455,500 | 33,557,059 | 4,323,966,213 | 91.00 | 128.854147 |
H3_R1 | 31,602,257 | 4,740,338,550 | 29,790,898 | 3,839,171,450 | 94.27 | 128.8706185 |
H3_R2 | 31,602,257 | 4,740,338,550 | 28,994,009 | 3,728,257,975 | 91.75 | 128.5871842 |
X1_R1 | 38,506,430 | 5,775,964,500 | 36,323,284 | 4,706,649,914 | 94.33 | 129.5766626 |
X1_R2 | 38,506,430 | 5,775,964,500 | 35,392,852 | 4,573,185,587 | 91.91 | 129.2121242 |
X2_R1 | 26,676,689 | 4,001,503,350 | 24,977,453 | 3,294,932,070 | 93.63 | 131.9,162,554 |
X2_R2 | 26,676,689 | 4,001,503,350 | 23,234,815 | 3,048,373,656 | 87.10 | 131.1985336 |
X3_R1 | 26,125,305 | 3,918,795,750 | 24,664,499 | 3,184,364,078 | 94.41 | 129.1071867 |
X3_R2 | 26,125,305 | 3,918,795,750 | 23,447,530 | 3,013,771,864 | 89.75 | 128.5325944 |