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Table 1 Comparison of the editing sites detected in five mtDNA genes cotton materials

From: RNA editing analysis of ATP synthase genes in the cotton cytoplasmic male sterile line H276A

Gene Position Code aa change Editing efficiency (%) Codon position
H276A H276B F1(H276A/H268)
atp 1 1039 Ccc P > S 100 100 100 1
1064 tCg S > L 100 100 100 2
1216 cCt L > F 100 100 100 2
1292 cCg P > L 100 100 100 2
1415 cCa P > L 100 100 100 2
1484 cCa P > L 100 100 100 2
atp4 115 Cgt R > C 100 90.0 100 1
212 tCg S > L 83.3 100 100 2
221 ttC F > F 100 100 100 3
224 cCc P > L 83.3 100 100 2
225 ccC P > L 58.3 90.9 0 3
245 cCt P > L 100 100 91.7 2
247 Ccg P > L 50 27.2 100 1
248 cCg P > L 91.7 100 91.7 2
392 tCa S > L 83.3 100 100 2
404 cCa P > L 83.3 100 91.7 2
413 aCt T > I 83.3 100 91.7 2
489 ccC P > P 83.3 90.9 91.7 3
atp6 106 Cca P > S 63.6 63.6 90.9 1
242 cCg P > L 54.5 45.5 63.6 2
294 ttC F > F 0 18.2 45.5 3
305 tCg S > L 45.5 54.5 72.7 2
323 tCg S > L 45.5 45.5 45.5 2
331 Cgt R > C 63.6 54.5 54.5 1
338 cCc P > L 36.4 54.5 63.6 2
339 ccC P > L 18.2 45.5 45.5 3
733 Cat H > Y 72.7 72.7 81.8 1
740 tCt S > F 45.5 63.6 72.7 2
787 tCt Q > * 63.6 45.5 81.8 1
atp 8 58 Ctc L > F 100 84.6 100 1
76 Cca P > L 100 100 93.3 1
77 cCa P > L 100 100 93.3 2
443 cCa P > L 100 100 100 2
atp9 20 tCa S > L 100 100 100 2
50 tCa S > L 85.7 93.3 100 2
182 tCg S > L 100 100 100 2
191 cCa P > L 92.6 100 100 2
205 Ctg L > L 85.7 86.7 92.9 1
215 tCc S > F 100 100 100 2
223 Cga R > * 100 100 100 1
243 ttC F > F 35.7 66.7 50 3
  1. Position, respect to ATG. Code, capital word represents RNA editing site in code. All the editing forms are C-U conversion