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Table 1 Twenty-one anatomical phenotypes measured or derived using VesselParser 2.0 on micro-CT scanned cross-section image

From: High-throughput micro-phenotyping measurements applied to assess stalk lodging in maize (Zea mays L.)

Traits by tissue region

Abbreviation

Stalk cross-section

 Principal axis diameter (mm)

PAD

 Auxiliary axis diameter (mm)

AAD

 Circumradius (mm)

CCR

 Section area (mm2)

SA

Vascular bundles

 Vascular bundle number

VB

 Vascular bundle number of peripheral layer

PVB

 Vascular bundle number of central 2nd layer

CVB-2

 Vascular bundle number of central 3rd layer

CVB-3

 Vascular bundle number of central 4th layer

CVB-4

 Vascular bundle total area in peripheral layer (mm2)

PA

 Vascular bundle total area in central 2nd layer (mm2)

CA-2

 Vascular bundle total area in central 3rd layer (mm2)

CA-3

 Vascular bundle total area in central 4th layer (mm2)

CA-4

 Vascular bundle area ratio of peripheral layer

PAR

 Vascular bundle area ratio of central 2nd layer

CAR-2

 Vascular bundle area ratio of central 3rd layer

CAR-3

 Vascular bundle area ratio of central 4th layer

CAR-4

 Vascular bundle average area (mm2)

MA

 Vascular bundle total area (mm2)

TA

 Ratio of vascular bundle total area and section area

Rsection

 Aspect ratio

AR