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Table 2 Summary of Illumina transcriptome reads mapped to the reference genes (≤ 5 bp mismatch)

From: Transcriptome analysis of phosphorus stress responsiveness in the seedlings of Dongxiang wild rice (Oryza rufipogon Griff.)

  Reads number(%)
LCK LLP RCK RLP
Total reads 46,784,432 48,816,718 43,588,908 46,760,112
Total BasePairs 4,678,443,200 4,881,671,800 4,358,890,800 4,676,011,200
Total mapped reads 29,634,341 (63.34) 31,008,106 (63.52) 26,743,293 (61.35) 29,478,172 (63.04)
Perfect match 22,232,426 (47.52) 23,129,717 (47.38) 19,983,467 (45.85) 21,989,061 (47.03)
≤ 5 bp mismatch 7,401,915 (15.82) 7,878,389 (16.14) 6,759,826 (15.51) 7,489,111 (16.02)
Unique match 17,816,293 (38.08) 18,899,219 (38.71) 16,812,042 (38.57) 18,502,324 (39.57)
Multi-position match 11,818,048 (25.26) 12,108,887 (24.80) 9,931,251 (22.78) 10,975,848 (23.47)
Total unmapped reads 17,150,091 (36.66) 17,808,612 (36.48) 16,845,615 (38.65) 17,281,940 (36.96)
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