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Table 2 Summary of Illumina transcriptome reads mapped to the reference genes (≤ 5 bp mismatch)

From: Transcriptome analysis of phosphorus stress responsiveness in the seedlings of Dongxiang wild rice (Oryza rufipogon Griff.)

 

Reads number(%)

LCK

LLP

RCK

RLP

Total reads

46,784,432

48,816,718

43,588,908

46,760,112

Total BasePairs

4,678,443,200

4,881,671,800

4,358,890,800

4,676,011,200

Total mapped reads

29,634,341 (63.34)

31,008,106 (63.52)

26,743,293 (61.35)

29,478,172 (63.04)

Perfect match

22,232,426 (47.52)

23,129,717 (47.38)

19,983,467 (45.85)

21,989,061 (47.03)

≤ 5 bp mismatch

7,401,915 (15.82)

7,878,389 (16.14)

6,759,826 (15.51)

7,489,111 (16.02)

Unique match

17,816,293 (38.08)

18,899,219 (38.71)

16,812,042 (38.57)

18,502,324 (39.57)

Multi-position match

11,818,048 (25.26)

12,108,887 (24.80)

9,931,251 (22.78)

10,975,848 (23.47)

Total unmapped reads

17,150,091 (36.66)

17,808,612 (36.48)

16,845,615 (38.65)

17,281,940 (36.96)