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Table 1 The data of Illumina transcriptome reads mapped to the reference genome (≤ 3 bp mismatch)

From: Transcriptome analysis of phosphorus stress responsiveness in the seedlings of Dongxiang wild rice (Oryza rufipogon Griff.)

Reads mapping

Reads number (%)

LCK

LLP

RCK

RLP

Total reads

46,784,432

48,816,718

43,588,908

46,760,112

Total BasePairs

4,678,443,200

4,881,671,800

4,358,890,800

4,676,011,200

Total mapped reads

34,881,473 (74.56)

36,708,638 (75.20)

31,979,139 (73.37)

34,819,568 (74.46)

Perfect match

25,627,140 (54.78)

26,844,106 (54.99)

23,267,595 (53.38)

25,316,122 (54.14)

≤ 3 bp mismatch

9,254,333 (19.78)

9,864,532 (20.21)

8,711,544 (19.99)

9,503,446 (20.32)

Unique match

34,230,815 (73.17)

35,986,019 (73.72)

31,136,589 (71.43)

34,001,830 (72.72)

Multi-position match

650,658 (1.39)

722,619 (1.48)

842,550 (1.93)

817,738 (1.75)

Total unmapped reads

11,902,959 (25.44)

12,108,080 (24.80)

11,609,769 (26.63)

11,940,544 (25.54)

  1. LLP leaves under low phosphorus stress treatment, RLP roots under low phosphorus stress treatment, LCK leaves under phosphorus sufficiency stress treatment, RCK roots under phosphorus sufficiency stress treatment. (The same as below.)
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Biological Research

ISSN: 0717-6287

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