Table 1 Summary of constituent data of Trinity-assembled E. fetida transcriptome
Total Trinity ‘genes’ | 74,381 |
Total Trinity transcripts | 90,862 |
Percent GC | 41.74 |
Stats based on ALL transcript contigs | |
Contig N10 | 788 |
Contig N20 | 586 |
Contig N30 | 472 |
Contig N40 | 395 |
Contig N50 | 339 |
Median contig length | 276 |
Average contig length | 340.18 |
Total assembled bases | 30,909,011 |
Stats based on ONLY LONGEST ISOFORM per ‘GENE’ | |
Contig N10 | 773 |
Contig N20 | 573 |
Contig N30 | 460 |
Contig N40 | 384 |
Contig N50 | 329 |
Median contig length | 272 |
Average contig length | 334.57 |
Total assembled bases | 24,885,474 |