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Table 5 Function annotation of differentially expressed genes (DEGs) in carcinoma-associated fibroblasts (CAF)

From: Analysis of gene expression changes associated with human carcinoma-associated fibroblasts in non-small cell lung carcinoma

 

TF genes

Oncogenes

TSG

Up-regualted

RUNX3, MEOX2, FOXE1, HOXD12, TFAP2C, ID1

SPHK1

RUNX3

Down-regulated

TBX4, RORB, PPARG, KLF4, IFI16, PBX1, SOX5, NFIA, SMAD3, FOXP2

TEC, MLF1, PBX1, BANF, MLLT3,CDON

LXN, DPP4, CLU, RARRES1, TGFBI, IGFBP5, ERRFI1, CADM1, JUP, DIRAS3, TXNIP, RARRES3, RPS6KA6, DNAJB4, WNT5A, SFRP1, ITGA7, DAPK1, RASL11A, EPB41, TP53INP1, SCARA3, HBP1, LIMD1, FBXO32, SMAD3, RNASET2, KCNRG, SEMA3B, NRCAM

  1. TF transcription factor, TSG tumor suppressor gene