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Table 3 Percentage of reads which unmapped on contigs generated with different assemblers

From: Improved assembly procedure of viral RNA genomes amplified with Phi29 polymerase from new generation sequencing data

   Middelburg ArTB 5290 Mengovirus AnrB 3741 Mengovirus ArB 19017 p valuea
Abyss Targeted sequences 6.99 % 2.64 % 2.25 % 0.04
Untargeted sequences 40.59 % 36.93 % 69.78 %
Ray Targeted sequences 6.76 % 0.92 % 2.26 % 0.14
Untargeted sequences 53.84 % 51.5 % 71.41 %
SPAdes 3.0 Targeted sequences 0.57 % 0.82 % 0.65 % 0.001
Untargeted sequences 47.39 % 55.87 % 60.02 %
SPAdes 3.5/3.6 Targeted sequences 3.05 % 0.6 % 0.48 % 0.02
  Untargeted sequences 34.12 % 55.54 % 60.02 %
p valuea   0.13 0.003 0.01 5.10e−6
  1. a Determined according to the Fisher Test