|
ArTB 5290
|
ArB 19017
|
AnrB 3741
|
---|
Targeted
|
Untargeted
|
Targeted
|
Untargeted
|
Targeted
|
Untargeted
|
---|
ABYSS
|
Contigs (≥50 bp)
|
2463
|
11,822
|
24
|
20,618
|
15
|
5905
|
Contigs (≥1000 bp)
|
3
|
0
|
2
|
0
|
1
|
0
|
Largest contig
|
1807
|
372
|
3219
|
195
|
7025
|
266
|
Mean length
|
88
|
84
|
576
|
82
|
392
|
82
|
N50
|
1185
|
124
|
2574
|
124
|
7025
|
124
|
L50
|
3
|
1501
|
1
|
2218
|
1
|
599
|
Ray
|
Contigs (≥50 bp)
|
2
|
35
|
3
|
12
|
4
|
28
|
Contigs (≥1000 bp)
|
2
|
0
|
2
|
2
|
2
|
0
|
Largest contig
|
6906
|
837
|
4088
|
1873
|
4360
|
552
|
Mean length
|
4844
|
284
|
2013
|
210
|
2571
|
523
|
N50
|
6906
|
575
|
4088
|
1102
|
3745
|
552
|
L50
|
1
|
2
|
1
|
2
|
1
|
1
|
SPAdes v3.0
|
Contigs (≥50 bp)
|
2
|
371
|
1
|
16
|
1
|
322
|
Contigs (≥1000 bp)
|
1
|
2
|
1
|
2
|
1
|
0
|
Largest contig
|
11,468
|
1065
|
7548
|
3492
|
7562
|
951
|
Mean length
|
5789
|
145
|
7562
|
127
|
7548
|
110
|
N50
|
11,468
|
892
|
7548
|
3492
|
7562
|
951
|
L50
|
1
|
3
|
1
|
1
|
1
|
1
|
SPAdes v3.5/SPAdes v3.6
|
Contigs (≥50 bp)
|
5
|
10,435
|
7
|
569
|
2
|
322
|
Contigs (≥1000 bp)
|
1
|
0
|
1
|
0
|
1
|
0
|
Largest contig
|
11,314
|
331
|
7548
|
396
|
7548
|
951
|
Mean length
|
2359
|
100
|
3896
|
127
|
1174
|
110
|
N50
|
11,314
|
129
|
7548
|
141
|
7548
|
951
|
L50
|
1
|
2492
|
1
|
113
|
1
|
1
|
- The reads whose regions of the viral sequences were selected within the reads were named «Targeted Sequences» or TS, whereas the untreated sequences were named «Untargeted Sequences» or US