Table 2 Assembly of Mengovirus and MIDV genomes with different assembler software with targeted and untargeted sequences obtained after selection using similarity-based approach
ArTB 5290 | ArB 19017 | AnrB 3741 | |||||
|---|---|---|---|---|---|---|---|
Targeted | Untargeted | Targeted | Untargeted | Targeted | Untargeted | ||
ABYSS | Contigs (≥50 bp) | 2463 | 11,822 | 24 | 20,618 | 15 | 5905 |
Contigs (≥1000 bp) | 3 | 0 | 2 | 0 | 1 | 0 | |
Largest contig | 1807 | 372 | 3219 | 195 | 7025 | 266 | |
Mean length | 88 | 84 | 576 | 82 | 392 | 82 | |
N50 | 1185 | 124 | 2574 | 124 | 7025 | 124 | |
L50 | 3 | 1501 | 1 | 2218 | 1 | 599 | |
Ray | Contigs (≥50 bp) | 2 | 35 | 3 | 12 | 4 | 28 |
Contigs (≥1000 bp) | 2 | 0 | 2 | 2 | 2 | 0 | |
Largest contig | 6906 | 837 | 4088 | 1873 | 4360 | 552 | |
Mean length | 4844 | 284 | 2013 | 210 | 2571 | 523 | |
N50 | 6906 | 575 | 4088 | 1102 | 3745 | 552 | |
L50 | 1 | 2 | 1 | 2 | 1 | 1 | |
SPAdes v3.0 | Contigs (≥50 bp) | 2 | 371 | 1 | 16 | 1 | 322 |
Contigs (≥1000 bp) | 1 | 2 | 1 | 2 | 1 | 0 | |
Largest contig | 11,468 | 1065 | 7548 | 3492 | 7562 | 951 | |
Mean length | 5789 | 145 | 7562 | 127 | 7548 | 110 | |
N50 | 11,468 | 892 | 7548 | 3492 | 7562 | 951 | |
L50 | 1 | 3 | 1 | 1 | 1 | 1 | |
SPAdes v3.5/SPAdes v3.6 | Contigs (≥50 bp) | 5 | 10,435 | 7 | 569 | 2 | 322 |
Contigs (≥1000 bp) | 1 | 0 | 1 | 0 | 1 | 0 | |
Largest contig | 11,314 | 331 | 7548 | 396 | 7548 | 951 | |
Mean length | 2359 | 100 | 3896 | 127 | 1174 | 110 | |
N50 | 11,314 | 129 | 7548 | 141 | 7548 | 951 | |
L50 | 1 | 2492 | 1 | 113 | 1 | 1 | |