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Table 1 Overview of sequencing data

From: Improved assembly procedure of viral RNA genomes amplified with Phi29 polymerase from new generation sequencing data

 

Middelburg ArTB 5290

Mengovirus AnrB 3741

Mengovirus ArB 19017

Total number of reads

11,875,121

11,925,315

12,708,896

Mean read length (bp)

101

101

101

Mus musculus reads removal by mapping

4,951,166 (41.69 %)

5,207,943 (43.67 %)

4,218,708 (33.35 %)

Trimmed reads (after host removal)

6,549,596 (58.31 %)

6,372,036 (53.43 %)

8,097,092 (63.71 %)

Mean trimmed read length (bp)

93.75

90.49

87.13

Mean Phred score

36

36

36

Total number of viral reads

357,760 (5.46 %)

136,903 (2.1 %)

495,356 (6.1 %)