50 years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification

Biological Research

Table 1 Sequence pools based on secondary structure dissection

Abbr.	Sequences	Description	Name
random	16447	Non-transmembrane random coils	Random coil
s-sheet	8134	Non-transmembrane β-sheets	Soluble β-sheets
s-helix	34452	Non-transmembrane α-helices	Soluble α-helices
tm-sheet	4407	Transmembrane β-sheets	Trans-membrane β-sheets
tm-helix	9922	Transmembrane α-helices	Trans-membrane α-helices

All peptides have a minimal length of ten amino acids required for EBBS based analysis. Soluble pools contain only peptides with the defined SSE, while the trans-membrane pools contain both, peptides with the given SSE only and with the given SSE and additional amino acids to reach a length of ten amino acids

ISSN: 0717-6287